| Warrington Town | | 1993 | | First Round | 19-09-1993 | | Bury | Warrington Town | 6-4 | | 1994 | | Second Round | 16-10-1994 | | Warrington Town | Manchester United | 3-4 | | 1995 | | First Round | 17-09-1995 | | Warrington Town | Chesterfield | 1-2 | |
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| 1996 | | First Round | 29-09-1996 | | Sheffield Hallam University | Warrington Town | 1-2 | | Second Round | 03-11-1996 | | Oldham Athletic | Warrington Town | 11-3 | | 2005 | | First Qualifying Round | 11-09-2005 | | Liverpool Manweb Feds | Warrington Town | 4-0 | | 2008 | | First Qualifying Round | 28-09-2008 | | Warrington Town | Sefton Peronni | 3-3 | |
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| 2009 | | First Qualifying Round | 27-09-2009 | | Abbeytown | Warrington Town | 1-2 | | Second Qualifying Round | 11-10-2009 | | Warrington Town | Hull City | 0-8 | |
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| 2010 | | Second Qualifying Round | 24-10-2010 | | Warrington Town | Blackpool Wren Rovers | 1-4 | | 2011 | | First Qualifying Round | 02-10-2011 | | Lancaster City | Warrington Town | 2-4 | | Second Qualifying Round | 23-10-2011 | | Warrington Town | Crewe Alexandra | 0-7 | | 2012 | | First Qualifying Round | 30-09-2012 | | Warrington Town | Blackpool | 1-11 |
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